Paychex Link and Sync

Integration; fast, easy and secure

Key benefits

  • Time savings – No more time-consuming, manual entry. Payroll data automatically posts to your QuickBooks Online account so you don’t have to.
  • Convenience – A seamless flow of general ledger information into QuickBooks Online that is accurate and secure .
  • Peace of mind – Paychex GLS support is available Monday to Friday, 8 a.m. to 8 p.m. ET, at 877-456-6317.

How it works with QuickBooks

Paychex, Inc. is a leading provider of integrated solutions for payroll, HR, retirement, and insurance services, empowering business owners to focus on the growth and management of their business. With Paychex General Ledger Service, you can securely post payroll entries to your Intuit accounting package in just seconds.


The Paychex General Ledger service through Link and Sync provides clients and accountants ease in synchronizing QuickBooks Online and Paychex Flex Payroll items. With each payroll , payroll transactions will automatically transfer to QuickBooks Online.


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General Ledger Services are included as part of the Paychex Bundled services with no incremental charges.

Paychex Flex Pro Bundle 0 Unlimited An all-inclusive set fee per employee for 15+ product including General Ledger Service
Paychex Flex Enterprise Bundle 0 Unlimited An all-inclusive set fee per employee for 20 + product including General Ledger Service

Online support:


Is there an additional fee for Paychex General Ledger Services?
General Ledger Services are included in the bundled packages with Paychex payroll services at no additional costs for the product or the integration.
What information is required for setting up the Integration with QuickBooks Online?
On-boarding the General Ledger service will require minimal information, including a brief checklist and the chart of Accounts from QuickBooks Online. This information will be obtained at Payroll setup or by calling 1-877-456-6317.